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Creators/Authors contains: "Song, Tingjie"

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  1. DNA has shown great biocompatibility, programmable mechanical properties, and precise structural addressability at the nanometer scale, rendering it a material for constructing versatile nanorobots for biomedical applications. Here, we present the design principle, synthesis, and characterization of a DNA nanorobotic hand, called DNA NanoGripper, that contains a palm and four bendable fingers as inspired by naturally evolved human hands, bird claws, and bacteriophages. Each NanoGripper finger consists of three phalanges connected by three rotatable joints that are bendable in response to the binding of other entities. NanoGripper functions are enabled and driven by the interactions between moieties attached to the fingers and their binding partners. We demonstrate that the NanoGripper can be engineered to effectively interact with and capture nanometer-scale objects, including gold nanoparticles, gold NanoUrchins, and SARS-CoV-2 virions. With multiple DNA aptamer nanoswitches programmed to generate a fluorescent signal that is enhanced on a photonic crystal platform, the NanoGripper functions as a highly sensitive biosensor that selectively detects intact SARS-CoV-2 virions in human saliva with a limit of detection of ~100 copies per milliliter, providing a sensitivity equal to that of reverse transcription quantitative polymerase chain reaction (RT-qPCR). Quantified by flow cytometry assays, we demonstrated that the NanoGripper-aptamer complex can effectively block viral entry into the host cells, suggesting its potential for inhibiting virus infections. The design, synthesis, and characterization of a sophisticated nanomachine that can be tailored for specific applications highlight a promising pathway toward feasible and efficient solutions to the detection and potential inhibition of virus infections. 
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    Free, publicly-accessible full text available November 27, 2025
  2. Trinucleotide repeat (TNR) sequences widely exist in nature and their overgrowth is associated with two dozen neurodegenerative diseases in humans. These sequences have a unique helical flexibility, which affects their biophysical properties. A number of biophysical properties of these sequences have been studied in the past except their surface-tethered monolayers. To address the effect of sequence context and the associated helical flexibility on TNR monolayers, disease-relevant TNRs from three flexibility groups were surface-assembled on gold surfaces. The properties of the TNR films were studied, including charge transfer resistance ( R ct ) by electrochemical impedance spectroscopy (EIS), surface density by chronocoulometry (CC), surface topography by atomic force microscopy (AFM), and electrical conductivity by conducting atomic force microscopy (C-AFM). We found that the TNR film properties are characteristically sequence dependent rather than being dependent on their flexibility rank reported in the literature. The characteristic properties of TNR films studied here may be used for engineering label-free biosensors to detect neurological disorders and build DNA bioelectronics. 
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